PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g034190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 372aa    MW: 43518.8 Da    PI: 5.9208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g034190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014339359222
                       EETTTTEEESSHHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                        C  Cgk F++  + ++H ++
  Sopen03g034190.1 339 YCMVCGKKFKSEKQWRNHEQS 359
                       599***************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.1E-2142120IPR001623DnaJ domain
SuperFamilySSF465656.8E-2243129IPR001623DnaJ domain
SMARTSM002712.8E-1646108IPR001623DnaJ domain
CDDcd062571.19E-1547105IPR001623DnaJ domain
PROSITE profilePS5007617.45147116IPR001623DnaJ domain
PfamPF002261.3E-1848113IPR001623DnaJ domain
PRINTSPR006253.1E-124967IPR001623DnaJ domain
PRINTSPR006253.1E-126782IPR001623DnaJ domain
PRINTSPR006253.1E-1288108IPR001623DnaJ domain
PROSITE patternPS00636093112IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.26E-12325368No hitNo description
SMARTSM004511.1E-4335369IPR003604Zinc finger, U1-type
PROSITE profilePS501578.85338367IPR007087Zinc finger, C2H2
PfamPF121711.2E-9338363IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280340362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MFWSWLLESV LNKVPLPFAA KQPLTDQPKP TSLSFPGITA LSSEKRCFYE VLGVNCDCTA  60
DEIRSAFRKL ALQRHPDKLV RSGVPEFEAT AIFQELVNAY DVLSDAQERA SYDSQRSAYQ  120
ILFSNSDPKS SSNYSGSVPD LSSFFSNSVY SGYYDERKGF YKVYGDLFEK IYHRELNLAR  180
KLGTNLPEEA PIMGNMQSPY AQVTAFYNYW LGFATVNDFC QSDVYKSTLA SDRNSRRMME  240
DMNKKLRKKA KRDYNVTVRG LAEFVRRRDK RVIEMQIKRN EELEKKNEEG RKRMEELERE  300
KAERARNYVE PEWTRTEELQ DGGVEEESEE EEDEEEELYC MVCGKKFKSE KQWRNHEQSK  360
KHKENEKMAA LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243251KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069282.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-122JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A3Q7GGK60.0A0A3Q7GGK6_SOLLC; Uncharacterized protein
STRINGSolyc03g115120.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-110DNAJ heat shock N-terminal domain-containing protein