|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopen03g033920.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
MIKC_MADS |
Protein Properties |
Length: 246aa MW: 28398.2 Da PI: 8.8752 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen03g033920.1 | genome | spenn | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Sopen03g033920.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
|
2 | K-box | 100 | 3.3e-33 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++ +++++ ++e+ +Lk+++e Lqr+qR++lGedL++Ls k+L+qLe+qLe+slk+iRs+K++++l+q+ +lq+ke++l e n+ Lr+klee
Sopen03g033920.1 82 QSVTDTQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLSSKDLEQLENQLESSLKQIRSRKTQFMLDQLADLQQKEQMLAESNRLLRRKLEE 173
567789***********************************************************************************987 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.13E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-34 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-28 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.935 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010076 | Biological Process | maintenance of floral meristem identity |
GO:0048440 | Biological Process | carpel development |
GO:0048441 | Biological Process | petal development |
GO:0048442 | Biological Process | sepal development |
GO:0048443 | Biological Process | stamen development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMVKTIEKY QRCSYATLEA NQSVTDTQNN YHEYLRLKAR VELLQRSQRN FLGEDLGTLS 120 SKDLEQLENQ LESSLKQIRS RKTQFMLDQL ADLQQKEQML AESNRLLRRK LEESVAGFPL 180 RLCWEDGGDH QLMHQQNRLP NTEGFFQPLG LHSSSPHFGY NPVNTDEVNA AATAHNMNGF 240 IHGWML
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 5e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AY294329 | 0.0 | AY294329.1 Lycopersicon esculentum MADS-box protein 1 mRNA, complete cds. |