PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g033800.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 558aa    MW: 61103.7 Da    PI: 8.5862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g033800.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16261310255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Sopen03g033800.2 261 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 310
                       889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-23256327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-19257328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.27E-15261314No hitNo description
SMARTSM003538.4E-13265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQAGGYL KTHDFLQPLE QAEKTLREEK  60
TKVEVATVEK PPPPVAATPS GEHILPGGIG TFSISYLHQR IPKPEASLFS VAQASSTDRN  120
DENSNCSSYT GSGFTLWDES AVKKGKTGKE NSGGDRHVLR EGGVNTGGVQ PTTSLEWQSQ  180
SSSNHKHNTT ALSSLSSAHQ SSPLKSQSFL HMITSAKSAQ DDDDDEDEDF VIKKEPQSHL  240
RGSLSVKVDG KGNDQKPNTP RSKHSATEQR RRSKINDRFQ MLRGIIPNSD QKRDKASFLL  300
EVIEYIHFLQ EKVHKYEESY QGWDNEPPKL PLSKCHRTTH GVSDLPQRII NASGAALTYD  360
GKFDESIMGI SSANPINVQK LEPNISSTGL KEKGQQPGLT NKPTTVPMHP NTFSFSGTSS  420
TAALYSSKLI ADTDKLESKS HSQFSLSRSH MTDYAIPNAN PERLELPIES GTISISSAYS  480
QGLLNTLTQA LHSSGVDLTQ ANISVQIDLG KRANGRVNSS ASTVKGDNVS TSNQPIPKSR  540
VTTTREDPDH AFKRRKTS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070937.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ39e-93BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A3Q7GGC30.0A0A3Q7GGC3_SOLLC; Uncharacterized protein
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.45e-89bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]