PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g033800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 557aa MW: 61032.6 Da PI: 8.5862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.7 | 1.6e-16 | 260 | 309 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYI+ Lq Sopen03g033800.1 260 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 309 889*************************9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-23 | 255 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-19 | 256 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.272 | 258 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-14 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.32E-15 | 260 | 313 | No hit | No description |
SMART | SM00353 | 8.4E-13 | 264 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGYLK THDFLQPLEQ AEKTLREEKT 60 KVEVATVEKP PPPVAATPSG EHILPGGIGT FSISYLHQRI PKPEASLFSV AQASSTDRND 120 ENSNCSSYTG SGFTLWDESA VKKGKTGKEN SGGDRHVLRE GGVNTGGVQP TTSLEWQSQS 180 SSNHKHNTTA LSSLSSAHQS SPLKSQSFLH MITSAKSAQD DDDDEDEDFV IKKEPQSHLR 240 GSLSVKVDGK GNDQKPNTPR SKHSATEQRR RSKINDRFQM LRGIIPNSDQ KRDKASFLLE 300 VIEYIHFLQE KVHKYEESYQ GWDNEPPKLP LSKCHRTTHG VSDLPQRIIN ASGAALTYDG 360 KFDESIMGIS SANPINVQKL EPNISSTGLK EKGQQPGLTN KPTTVPMHPN TFSFSGTSST 420 AALYSSKLIA DTDKLESKSH SQFSLSRSHM TDYAIPNANP ERLELPIESG TISISSAYSQ 480 GLLNTLTQAL HSSGVDLTQA NISVQIDLGK RANGRVNSSA STVKGDNVST SNQPIPKSRV 540 TTTREDPDHA FKRRKTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013786 | 0.0 | BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015070938.1 | 0.0 | transcription factor BIM1 isoform X2 | ||||
Swissprot | Q9LEZ3 | 1e-93 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A3Q7GGC3 | 0.0 | A0A3Q7GGC3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114720.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 7e-90 | bHLH family protein |
Publications ? help Back to Top | |||
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