PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032940.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 230aa    MW: 25609.9 Da    PI: 8.7256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032940.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035107129123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C k F ++  L  H++ H
  Sopen03g032940.3 107 YECHFCLKKFANSRALGGHQNAH 129
                       99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-5105134No hitNo description
PROSITE profilePS5015711.011107134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001107133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006284Biological Processbase-excision repair
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDEALYQKST YLNLLSTGLN GTDNVCCKTT TSDKKLRIFG FEVSPCSNDI ICSKSESDES  60
ISSSETFADG RLVEKTSISM SSSSIVLPNP NENLRNLSSS VVSKFKYECH FCLKKFANSR  120
ALGGHQNAHR KERLKKKRMD LEAKRASSML HFFSLIRNAG VIYPYYSLSH QNLFVSGSST  180
INFSSVYHCQ NGTHPLYVAV DAHPQGELQL QNNCSTLLQG GESRKRDLLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067463.11e-166uncharacterized protein LOC107012202 isoform X1
TrEMBLM1C9N81e-146M1C9N8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628661e-147(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-10C2H2 family protein