PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g032940.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 506aa    MW: 56755.7 Da    PI: 8.5504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g032940.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF481504.4E-3399268IPR011257DNA glycosylase
Gene3DG3DSA:1.10.340.301.3E-17106206IPR011257DNA glycosylase
CDDcd000561.29E-23108261No hitNo description
PfamPF007302.1E-8109250IPR003265HhH-GPD domain
SMARTSM004785.8E-14113270IPR003265HhH-GPD domain
Gene3DG3DSA:1.10.1670.101.6E-15207268IPR023170Helix-turn-helix, base-excision DNA repair, C-terminal
SuperFamilySSF576675.73E-5381410No hitNo description
PROSITE profilePS5015711.011383410IPR007087Zinc finger, C2H2
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006284Biological Processbase-excision repair
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MTKLTKTRKT PKRKKTDGRC SPFPCPPSKS SRKANVTAGS SNDSEPFPDY SQPTPEECRA  60
VRDDLLALHG FPKEFIKYRK QRSLDHIEYE EDDISGAEPC KESVLDGLIN TILSQNTTEA  120
NSQKAFASLI SSFPTWECVL AADAKLVEDT IRCGGLAPTK TSCIKGILSS LLQKKGNLCL  180
EYLRELSIEE IKRELSCFRG IGPKTVACVL MFQLQRDDFP VDTHIFQIAK TLHWVPAAAD  240
VKKTYIHLNR RIPDELKFDL NCLIYTHAFQ TIWHARMDEA LYQKSTYLNL LSTGLNGTDN  300
VCCKTTTSDK KLRIFGFEVS PCSNDIICSK SESDESISSS ETFADGRLVE KTSISMSSSS  360
IVLPNPNENL RNLSSSVVSK FKYECHFCLK KFANSRALGG HQNAHRKERL KKKRMDLEAK  420
RASSMLHFFS LIRNAGVIYP YYSLSHQNLF VSGSSTINFS SVYHCQNGTH PLYVAVDAHP  480
QGELQLQNNC STLLQGGESR KRDLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4uob_A3e-2210527165240ENDONUCLEASE III-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067463.10.0uncharacterized protein LOC107012202 isoform X1
SwissprotF4JCQ33e-97DG783_ARATH; Putative DNA glycosylase At3g47830
TrEMBLA0A3Q7FR190.0A0A3Q7FR19_SOLLC; Uncharacterized protein
STRINGSolyc03g113880.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA619466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.15e-10C2H2 family protein