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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g029070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 458aa MW: 49804.4 Da PI: 5.2476 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g +t+ q++s+ qk+ Sopen03g029070.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 99 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-16 | 49 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.179 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.3E-17 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.6E-12 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-12 | 55 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 55 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.75E-9 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MVADAVNQVE GAQQGASSMI SSKLETVATQ GKAPTCLANE NVLKARKPYT ITKQREKWTE 60 EEHQRFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF AKVARDSGND GDESLNVIDI 120 PPPRPKKKPL HPYPRKMADS SIANKAVSGQ PERSPSPNAS GRESCSPDSV LPAIGLGIAE 180 YSVAEQQNSR FSPVSCTTDA HTANIISAEN DDESMSSNSN NVDAIHVTLK PVAASTSPIT 240 NSEFMECDIV HTENSCNGEK LAVEPPSASI KLFGKTVFVP DANNLAPPAP YNTEKENEIS 300 NEDVLHGFQA NQANSPFILA MVPGNMIPPA SWLSQNMLEN NRESTAAFPA ATISWWSWYQ 360 DLLYRSISSC GQTTVETASH CQGLKDEEPQ REGSSTGSSI GSASEVDDGN RSCETVESKC 420 TTKIKGFVPY KRCLAERDGK SSGAVLEERE SQRVRVCS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071307.1 | 0.0 | uncharacterized protein LOC107015511 isoform X1 | ||||
TrEMBL | A0A3Q7FNA0 | 0.0 | A0A3Q7FNA0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g098320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7447 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 8e-36 | MYB_related family protein |