PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g028560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 330aa    MW: 36674 Da    PI: 6.5135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g028560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09163210455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen03g028560.1 163 SHSLAERVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 210
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-10157214No hitNo description
SuperFamilySSF474593.27E-17157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-7163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAAFSSHQLQ HNNPFLLDSV FLPTSPIKMS GFFEEPNNSC IVQQFYQQEF PSNLISHENS  60
FCLDPKSSSS ISLDMDASSV TDKIESGINN NKANVSPLDK KRKSSEGSSS MTSAHSKNEK  120
QGDNGKKKKI NSKLVAKDEK KANEEAPTGY IHVRARRGQA TDSHSLAERV RREKISERMK  180
ILQSLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL TSFNPMYYDF GMDLDALMIR  240
PDDQSLSGLE TQMANIQQGS TTTTSQAAEV IANTNSGYQF LDNSTSLMFQ QAHFPNSIPQ  300
GIGQLLWGAD EQTQKIINQS GFSNNFCSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8231690.0JQ823169.1 Solanum lycopersicum basic helix-loop-helix (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068092.10.0transcription factor bHLH137
TrEMBLI6QQ450.0I6QQ45_SOLLC; Basic helix-loop-helix
STRINGSolyc03g097820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-59bHLH family protein