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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g024740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 20877.2 Da PI: 9.3358 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k+F + L H+ +H Sopen03g024740.1 40 FKCKKCKKRFESFQALGGHMTSH 62 89******************998 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F L H+r+H Sopen03g024740.1 86 HECSICGKNFAIGQALGGHMRKH 108 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.99E-8 | 39 | 108 | No hit | No description |
Pfam | PF13912 | 9.1E-11 | 40 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 79 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.7E-10 | 86 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.887 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDMTLKRSKV EEESVEKFAM ANCADIMKRN ELLERPNLIF KCKKCKKRFE SFQALGGHMT 60 SHKNKLNKLT TMSTAGELLH VNLQKHECSI CGKNFAIGQA LGGHMRKHRD ELNQLEHKKK 120 KMKLDESLIK SGRELAEALN SKSDELAEAR HDKLDLEGSK RTLFLGLNLD LNLTIDENEL 180 RTG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068881.1 | 1e-129 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A3Q7FLI4 | 1e-101 | A0A3Q7FLI4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g093870.1.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 4e-21 | C2H2 family protein |