PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g015710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 280aa    MW: 30056.3 Da    PI: 9.9797
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g015710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-0991116227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt++C+ f     Ck+Gd+C+FaHg+
  Sopen03g015710.1  91 KTKICSKFNTAEGCKFGDKCRFAHGE 116
                       89**********************96 PP
2zf-CCCH38.12.5e-12247271126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt+lC +fa+ G C +G+rC+FaHg
  Sopen03g015710.1 247 YKTKLCENFAK-GSCTFGERCHFAHG 271
                       9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4083462IPR000571Zinc finger, CCCH-type
SMARTSM003561.63461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-63659IPR000571Zinc finger, CCCH-type
PfamPF146080.44259No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-1386119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-888119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.24989117IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-489116IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-691116IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.14E-13147224IPR004088K Homology domain, type 1
SMARTSM003222.0E-9152222IPR004087K Homology domain
PROSITE profilePS5008413.167153217IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-14154222IPR004088K Homology domain, type 1
CDDcd001052.08E-10155217No hitNo description
PfamPF000132.1E-8155219IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.2E-16244277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-9244276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.065246273IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8246272IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9247271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDIRKRNRNE SGFNGNAGFK KAKPELDSIS SGIGSKSKPC TKFFSTVGCS FGENCHFLHY  60
VPGGYNVVAK MMNIAPSPVS PIPSRNTPAV KTKICSKFNT AEGCKFGDKC RFAHGEWEIG  120
KPIVPSPRAM GVGPIPDRFG ERRESPVASF GTSATAKISV DAFHVGPIIG KGGVNSKQIC  180
WQTGAKLAIR EHEMDKNLRN IELEGTFEQI SQASAMVREL ISNLGSVGGP GRTAAVQGGR  240
APPMNNYKTK LCENFAKGSC TFGERCHFAH GDAELRKTGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067421.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7FL700.0A0A3Q7FL70_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000254450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-78C3H family protein