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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g015140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 16941.5 Da PI: 10.1266 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.7 | 5.5e-17 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks r vtfskRr+g++KK eEL L++ +v+ +++s+ g++y+y Sopen03g015140.1 12 KITKKSYRMVTFSKRRKGLFKKNEELESLTGSQVSSVVLSPAGRIYTY 59 68999******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-16 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.619 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-17 | 4 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.68E-17 | 4 | 60 | No hit | No description |
PRINTS | PR00404 | 9.3E-14 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-19 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-14 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-14 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MGTGKKKIEI EKITKKSYRM VTFSKRRKGL FKKNEELESL TGSQVSSVVL SPAGRIYTYG 60 DVNTAINMHF SKIYCMRQSD SDVVVSSGSS ELRSSSTSRR KSLRDWVEDI DVEQCQNLNQ 120 LLLLKEQLEG TKKKIVSIED SKSFQALFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068736.1 | 1e-105 | MADS-box transcription factor 15-like | ||||
TrEMBL | A0A3Q7FKZ6 | 4e-64 | A0A3Q7FKZ6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g062820.1.1 | 6e-65 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 3e-12 | M-type_MADS family protein |