PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g014990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 282aa    MW: 32936.2 Da    PI: 4.5969
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g014990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.82.9e-2151293128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       +G+rFhPtd el+ +yLk+  +g+    +++ i+ +diy    Pw++   ++++ek  yf ++ +k++ ++kr  r+  +g+Wk +  +  + 
  Sopen03g014990.1   5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANSKEKFHYFITPLKKRKIKDKRFCRTCVKGTWKGQTAEDLIR 95 
                       7************.9*******9985444556*******87368***6.56666677789999999999***************999988888 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  g +vg k+ + f   +++ g++ +W+m eyr+
  Sopen03g014990.1  96 RNsMGPVVGFKRNFRFE--TSECGQNKTWLMIEYRV 129
                       8656778*********8..788999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.423153IPR003441NAC domain
PfamPF023656.4E-155129IPR003441NAC domain
SuperFamilySSF1019416.8E-225153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANSKEKFH  60
YFITPLKKRK IKDKRFCRTC VKGTWKGQTA EDLIRRNSMG PVVGFKRNFR FETSECGQNK  120
TWLMIEYRVA DSFFKENNHI VKEDFVVCRI KKKKDVDHHV MDAEDGGVAG VIDPMLLLEP  180
NHNNDYSTTE LDQVRVCEAT TLDYDVQNSS TMENRETTLE VEESDRVDGI RSDEDMCRML  240
EDILDVDIPN VIDDIKSDED MYRMFEDIVV GIPDDWLEDS LV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RIKKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068732.10.0NAC domain containing protein 50-like
TrEMBLA0A3Q7FKY80.0A0A3Q7FKY8_SOLLC; Uncharacterized protein
STRINGSolyc03g062670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-16NAC domain containing protein 52