PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen03g010770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 34924.5 Da PI: 5.2812 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.1 | 4.1e-15 | 46 | 95 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR +iN++f++Lr+l+P++ ++K + a+ ++++YI+ Lq Sopen03g010770.1 46 RSKHSETEQRRRIKINERFQTLRDLIPQN----DQKRDRASFMLEVIQYIQFLQ 95 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.183 | 44 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-21 | 44 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 45 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.15E-14 | 46 | 99 | No hit | No description |
Pfam | PF00010 | 1.1E-12 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 50 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MVRTVKNHHE EDEEDDEEFS SRTPDGSSQK GKLEGKSNDG KVSAHRSKHS ETEQRRRIKI 60 NERFQTLRDL IPQNDQKRDR ASFMLEVIQY IQFLQEKLQM YEGTNQGWSA EPSKLLPWRS 120 TPGPVEGSVE HSQIIRNGST HEDDIVINPT LVASVQSFVE PNLTAAALYR ATHGSHMAAD 180 EAIAFNMPLQ PNLFENASVE PSPDAEHPSQ TQSLCWPDKR DTIESEVLSY GRNDQEEVKF 240 DGEAVGRSHA YSQRLLNIIN QTLASVGVDP SLADVRVQLD ISKKTSSGAT ATRLSSGENY 300 GGAPKRLRTE GSI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015070909.1 | 0.0 | transcription factor BIM2 | ||||
TrEMBL | A0A0V0I169 | 0.0 | A0A0V0I169_SOLCH; Putative transcription factor BIM2-like | ||||
STRING | XP_009594724.1 | 1e-156 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8947 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-46 | BES1-interacting Myc-like protein 2 |