PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g002350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 830aa    MW: 92548.7 Da    PI: 4.2677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g002350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.8e-06315334525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       +C ffar G+C  G++C+F H
  Sopen03g002350.1 315 RCEFFAR-GWCIKGNSCRFLH 334
                       5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.43E-5310334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413310337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MPSSGAAVDP SIKSSSSIPN PEVEEDEDVE YEEIEVEVEE EIEVEEEEEE EMEVEDEVEE  60
EEEEEEEVGG EGSISLNVDD KKEEVEEEEE EEEEEEEEEE EEEVAVEEEE EEEEEVQGEG  120
SIPMNVDDKK EEVEEEEDDD DEEEMQGDEK KGQGSSLLNI DDQKDGIQVL EALALEHLLR  180
SDFSSQQELV ANLPQQTPLI EGANESCRIS DSDGTRERID GKRTHIDSDV QASEFEDGKT  240
NTERIQRSGQ ELDAETLTNV SGKVAIGIQF TDGGDQEAMD NLKQTSPRLD VLKTRQRSSS  300
PAADSRGESK RLAMRCEFFA RGWCIKGNSC RFLHIKDHVT SHDKDGGLDD TMIKSKLADG  360
KGLEESGKRS VLDGSSDSVQ SAVQSGENLK LRGDEELHMR TDGPSSTPDF RRESLGCKPH  420
LAGYSTSSSP LLKDGSLHKN ILHDGKLSSV LLSGSYQNTV VSPYTSGLDD MNHKRNRSVF  480
EKHGLRVFND SVDRLSHHCS SSRNIDALDD QKLLDCSQEY SSSRSTSLHH TSSAFPSSKT  540
ELSQIDLSWD TRYSSDYRTM APFDDWEPSV PFRPSFLLSQ MIGCPESLYD PIRDSIDQSN  600
VGDGPSKLSS SAKGGPVVTK HMQANADPVS TGTLGPEQSS NEVPISGNIY HRDILPDNLS  660
EKGMSTNETD TADTAVAHQE INTSSKEEKY SRSANLRGAT KADKQSSTEL PRTRTRKKTQ  720
SESERLRHGT EIDIDRKTDR SVNKESRVMK HFHAALVEFV KELLRPTWSE GLMSKDAYKM  780
IVKKTINKVV NSLHPNQIPG TAESIRQYLD LSQQKLAKLI EAYVEKYGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771487.10.0protein split ends-like isoform X1
TrEMBLA0A3Q7FFD80.0A0A3Q7FFD8_SOLLC; Uncharacterized protein
STRINGSolyc03g006350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-28C3H family protein