PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g039120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 274aa    MW: 31281 Da    PI: 4.5434
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g039120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.5e-1874164187
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+l +sdv++++r+v+pkk ae++    +   +e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ ++L++gD + +++++
  Sopen02g039120.1  74 FDKQLQNSDVSSLRRIVVPKKAAERYlpalE--IKEGFPITMADMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHELRQGDYFALHYND 163
                       89**************************544..557788********9*********888899999999.******************99875 PP

                       S CS
                B3  87 r 87 
                       +
  Sopen02g039120.1 164 Q 164
                       4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.90E-2172161No hitNo description
SuperFamilySSF1019363.79E-2072167IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-2472167IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.12274176IPR003340B3 DNA binding domain
SMARTSM010194.2E-1474176IPR003340B3 DNA binding domain
PfamPF023621.7E-1574164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEITEAYGVM ADGNNNNSNS MMNPPTPTKR SRSQRRRRSS LNFTSLDFLS HVPPPLPPLP  60
PARVLEPTGF RFLFDKQLQN SDVSSLRRIV VPKKAAERYL PALEIKEGFP ITMADMDGIH  120
VWSFRYRYWP NNSSRMYVLE NTGDFVQTHE LRQGDYFALH YNDQKQIYGI EARKAGSGAV  180
FRGYEAEDVI LTDYAQAADD GNGALMNEAE MDMSSFYFPA MDNEMGMSFI YDTSFWNEPA  240
FDFVGGPMTY YSTNVYPMPS FGSIEDSFSV DDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-46711772108B3 domain-containing transcription factor FUS3
6j9b_D6e-46711772108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-179HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066191.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor FUS3
TrEMBLA0A3Q7FCD90.0A0A3Q7FCD9_SOLLC; Uncharacterized protein
STRINGSolyc02g094460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-53B3 family protein