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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g039080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 146aa MW: 16474.4 Da PI: 8.2299 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Sopen02g039080.1 20 FSCLYCSRKFCTSQALGGHQNAH 42 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-5 | 17 | 47 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLEPPMIPKP KVAPSSSRMF SCLYCSRKFC TSQALGGHQN AHKRERAASR RNMFSTDPNN 60 NNNRLQFHFL HNNNENMPQQ HNIINANYSC QLQPPPPSNN NLCSSSSAVF YPPPDHGYFT 120 TTTTGEDLSL SPIDEPQLNL DLTLRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064936.1 | 1e-104 | zinc finger protein KNUCKLES-like | ||||
TrEMBL | M1BSW6 | 3e-54 | M1BSW6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052170 | 6e-55 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9238 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 2e-17 | C2H2 family protein |