PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036640.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 604aa    MW: 64907.2 Da    PI: 8.2306
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-24215258144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Sopen02g036640.1 215 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVE 258
                       79****************************************98 PP
2QLQ61.62.1e-21145181137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++FT++Q+++L++Q+l+yK+++an PvP++Ll +i+k
  Sopen02g036640.1 145 GPFTPSQWMELEHQALIYKHFVANIPVPHHLLIPIKK 181
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-13145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.3E-15146179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.511146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.563215259IPR014977WRC domain
PfamPF088799.4E-21216258IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDFGGLMTME TAQQSETSNG SGQLKQQRSG PCDDNIWRPS KLPKPADDLS AFCKQQGPTS  60
TLFMRSDSPN DGRGHSTMLS FSSNKSEEIP FLSTNNVSAQ HSSTNLPFPL LDSGSYNTRA  120
ASACSAYASG GSNENTPGSF SRFRGPFTPS QWMELEHQAL IYKHFVANIP VPHHLLIPIK  180
KSVNPYAFSG LSADPYASSN WGWGTFHLGF AGNTDPEPGR CRRTDGKKWR CSREAVPDQK  240
YCERHINRGR HRSRKHVEVQ NGHAVSGSTT SKVASVAPSS SATVISSSGT LLNNGGASNS  300
LGTVQQQLNS LQPSAANPNT EQLVNRMLGH RGASVISPTI CVKPKDSAIS VQKQHNGVEL  360
SSRTNFGLVS SDSLLNPSQR NSFVNPKNPI AFLNFNDQER SEQHPVHHFI DGWAKEQSSR  420
ASTCWPDQLK DWTQLSMSIP MTASDFASSS SSPRQEKLTL SPLRVSCNVD PIQMGLGMTS  480
SCGEPMQKTA SWVPVCWEHS LGGPLGEVLN STAGNSGDGK SVSALNLGTE VWDNSPSFGS  540
SPTGVLQKTT FVSLSNSSSG SSPRGDSKKV HDGIGMCDEV IGLTVASSVC IPSMEVSCLI  600
KNKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063896.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A3Q7FYY80.0A0A3Q7FYY8_SOLLC; Uncharacterized protein
STRINGSolyc02g092070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-97growth-regulating factor 1