PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 662aa    MW: 74903.1 Da    PI: 8.3687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-05623644323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C++Cg++F +k ++++H ++ H
  Sopen02g036600.1 623 CEICGYCFINKAEFEQHKNSeH 644
                       ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.83E-5440IPR001810F-box domain
Gene3DG3DSA:3.80.10.107.2E-6439IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.2E-6155207IPR032675Leucine-rich repeat domain, L domain-like
PfamPF034782.2E-13304361IPR005174Domain unknown function DUF295
PfamPF015951.4E-13379473IPR002550Domain of unknown function DUF21
SMARTSM0035526592616IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954621649IPR007087Zinc finger, C2H2
SMARTSM003550.38621644IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280623644IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAAGWSELPK DLLWSIATCL VTYTDQVRFT CVCTSWRSVL PTIEVRSHAW LLLPRNNDTN  60
KEYEKFYSLH ERKVHYLEVP DEVLSKKFRG SSHSWLVSIE DSPRISLFNP FTRVQIALPP  120
RYKFPDVRKY CAKKFDTEYA LEPYDGQKNT YFEAASHVHN SFLDKLVLSS SPTSSKAPNC  180
MVAAIYGSHC NLAYCKVGDK RWTCIAKGMM GYDDAIFHDQ KLYAVTFTSY VEVFDLSASP  240
KLVDTIEPPQ EEGYPQRRYL VKTSIGLLQV QRHTKNTGDR KTYLYRTTFF NLYIYEPSSR  300
SWCKVENIGE NVLFLGLNTS ISIASSDLHG YKGNHIYFTD NFLDFHEFGV KGGYDIGVYD  360
LDSRSVQSLP CHDIEKPVVF LVLCAGLMSG LTLGLMSMSV IDLEVLAKSG TPKDRLHASK  420
ILTIVKQQHL LLCTLLISNA AAMEALPVFL DELVPDWGAI LLSVTLILLF GEVKNLVTIS  480
PSDNVPVKNL TVRRIPRVSA TMPLYDILNE FQKGLSRMDA VVKRPDGTIE KGSANLSTGV  540
ISELYDSLAS MEKETRASGD PINKTSTSEV GDLHDMMQNL ITDVGALTGF PKECLQCRRT  600
RLESAAAMKN HYRDKHKKHK ELCEICGYCF INKAEFEQHK NSEHSTRRVH KLAKKNPKKK  660
KN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064925.10.0F-box protein SKIP23-like
TrEMBLA0A3Q7FYX80.0A0A3Q7FYX8_SOLLC; Uncharacterized protein
STRINGSolyc02g092020.1.10.0(Solanum lycopersicum)