PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036390.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 308aa    MW: 34450.9 Da    PI: 8.2091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036390.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13119166355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  Sopen02g036390.2 119 QDHVLAERKRRERLTKRFIALSTLIPNL-----KKLDKATVLGDAIQYIKELE 166
                       56999***********************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.52E-13121170No hitNo description
SuperFamilySSF474592.49E-17121184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNDHNFVNQS QTMTQFNEFP FNSKPFSTFS PPPPPPSNVI SNYSYSNSMS TKNQFENLNT  60
FKVVKREVPS GTTINFSSSV NSMEDSDFGD IEAAMGFGAA ITTTTDQKKS YNRTSVQAQD  120
HVLAERKRRE RLTKRFIALS TLIPNLKKLD KATVLGDAIQ YIKELEEQVK TLEEKNKKCS  180
EEPVIPPAKR PRLVSSCADS SSSDEISSVS TVCTDRSLPD IEVRASDGNI LIRIYCKKQN  240
GMMKEIFNEV EKLHLSIISC SVMPFGYNTS HVTIIAQMDH KLTSNTPNHV ANRIRAAMVK  300
EEANSFTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065508.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7FCK40.0A0A3Q7FCK4_SOLLC; Uncharacterized protein
STRINGSolyc02g091810.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-41bHLH family protein