PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g034260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 390aa    MW: 43347.3 Da    PI: 5.7556
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g034260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.8e-061252439
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                      r+C+ +++   + +C+ ++ +lC+ C   +H +     H++
  Sopen02g034260.1 12 RVCDSCHSATCTVYCRADSAYLCAGCDARIHTSlmasrHER 52
                      79*****************************7677777875 PP
2zf-B_box28.92.3e-095398342
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       ++C+ +e+ ++ + C+ +   lC++C   +H+       H +vp+
  Sopen02g034260.1 53 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 98
                      689*****************************66899999877775 PP
3CCT69.86.9e-24321364144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Sopen02g034260.1 321 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 364
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883955IPR000315B-box-type zinc finger
SMARTSM003360.021946IPR000315B-box-type zinc finger
CDDcd000218.50E-91255No hitNo description
PROSITE profilePS5011911.1215198IPR000315B-box-type zinc finger
SMARTSM003361.6E-145198IPR000315B-box-type zinc finger
PfamPF006432.5E-75298IPR000315B-box-type zinc finger
CDDcd000212.29E-95498No hitNo description
PROSITE profilePS5101716.638321363IPR010402CCT domain
PfamPF062038.8E-18321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLKKENSNNW ARVCDSCHSA TCTVYCRADS AYLCAGCDAR IHTSLMASRH ERVWVCEACE  60
RAPAAFLCKA DAASLCASCD ADIHSANPLA RRHHRVPIMP IPGTIYGPPA VHTISGGSMM  120
IGGTTGEGTE DDGFLSLNQD ADDTTIDEED EDEAASWLLL NPPVKNNNKN NNYGMLFGGE  180
VVDDYLDLAE YGGDSQFNDQ YSVNQQQQHY SVPQKSYVED SVVPVQNGQR KSLILYQPPQ  240
QQQSHHLNFQ LGMEYDNSNT GYGYPASLSH SVSISSMDVS VVPESAQSET SISHPRPPKG  300
TIDLFSGPPI QIPPQLTPMD REARVLRYRE KKKNRKFEKT IRYASRKAYA ETRPRIKGRF  360
AKRTDVEVEV DQMFSTQLMT DSSYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4902510.0AY490251.1 Lycopersicon esculentum CONSTANS 1 (CO1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065855.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-127COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ2VY100.0Q2VY10_SOLLC; CONSTANS 1
STRINGSolyc02g089540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.12e-90CONSTANS-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]