PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g032780.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 462aa MW: 51172.7 Da PI: 6.0575

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g032780.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.4e-38	106	165	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+ sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s Sopen02g032780.1 106 PDKTLPCPRCNSMETKFCYFNNYNASQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 165 7899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	103	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.379	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DNSFSAGEVE QELKGLCDDC IDDNEHLTTE 60 DSQDQNPIQQ RCDIINYYES STAKTSKSEE EHGETSNSHE RNLKKPDKTL PCPRCNSMET 120 KFCYFNNYNA SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KHKNSVLHYS HISVSEAVSN 180 VRTNFPTETQ QPPLTLNGTI LSFDTDKPVS ESMVSVLNVA DKGMQNCSGN GFQKYKELRI 240 QAGDNGDDHS EGSSVTAISS KDNDNGLPNT PRKNYNSFPT HLPCFTGAPW PYIWSSVHCR 300 NAVPPPGYSL PGIPMSFFPA TTYWGCTIPG SWNVPWMSPP TASHNQMPLT PGPNSPTSRK 360 HSRDENVLKS TGTEEEQRKE SDPGKRLWFP KTLRIDDPGE AAKSPIWATL GIKHEVVDSV 420 GGGLPNDFLP KNDERSCVSE NSTLLQVNPA AMSRSLNFNE SS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DNSFSAGEVE QELKGLCDDC IDDNEHLTTE  60
DSQDQNPIQQ RCDIINYYES STAKTSKSEE EHGETSNSHE RNLKKPDKTL PCPRCNSMET  120
KFCYFNNYNA SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KHKNSVLHYS HISVSEAVSN  180
VRTNFPTETQ QPPLTLNGTI LSFDTDKPVS ESMVSVLNVA DKGMQNCSGN GFQKYKELRI  240
QAGDNGDDHS EGSSVTAISS KDNDNGLPNT PRKNYNSFPT HLPCFTGAPW PYIWSSVHCR  300
NAVPPPGYSL PGIPMSFFPA TTYWGCTIPG SWNVPWMSPP TASHNQMPLT PGPNSPTSRK  360
HSRDENVLKS TGTEEEQRKE SDPGKRLWFP KTLRIDDPGE AAKSPIWATL GIKHEVVDSV  420
GGGLPNDFLP KNDERSCVSE NSTLLQVNPA AMSRSLNFNE SS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063584.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A3Q7FWP3	0.0	A0A3Q7FWP3_SOLLC; Uncharacterized protein
STRING	Solyc02g088070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-84	cycling DOF factor 2