PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g032660.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 392aa MW: 44262.4 Da PI: 6.1739

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g032660.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++ Sopen02g032660.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIY 105 579*************************.89***********9888999************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl Sopen02g032660.1 106 SSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 955666**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-58	11	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	14	173	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDDKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTNNESGP PKKFLEKNFP PNDSWAICRI FKKTNSMANR 180 ALSYAWVNPL SEVASPELFN QSANTHFVSE NVSSITETGT ALHLSNNNDL LQGASNVPSY 240 KSLNAMASRP SYLSSPSTDI SYNFMFSSPE VSGQNNRCLL DANSMFFNIS PGLITDISKT 300 SESIDFDGSN QQLNSFAVSA SQEMQRSISM EDGEAGLKSN QTSTNDNTEW ENMRSVGFPF 360 SLADEWKPSL SWDSPPCPSE VSTSFSTNKC YN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDDKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV  120
FYRGRAARGI KTDWMMHEFR LPTTNNESGP PKKFLEKNFP PNDSWAICRI FKKTNSMANR  180
ALSYAWVNPL SEVASPELFN QSANTHFVSE NVSSITETGT ALHLSNNNDL LQGASNVPSY  240
KSLNAMASRP SYLSSPSTDI SYNFMFSSPE VSGQNNRCLL DANSMFFNIS PGLITDISKT  300
SESIDFDGSN QQLNSFAVSA SQEMQRSISM EDGEAGLKSN QTSTNDNTEW ENMRSVGFPF  360
SLADEWKPSL SWDSPPCPSE VSTSFSTNKC YN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-53	16	176	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00537	DAP	Transfer from AT5G39820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027770895.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9FIW5	1e-101	NAC94_ARATH; Putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-100	FEZ_ARATH; Protein FEZ
TrEMBL	M0ZLH2	0.0	M0ZLH2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003343	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-103	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]