PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 142aa MW: 15796.7 Da PI: 6.7423

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g031200.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.6e-43	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC ++C++ pyfp e+p+kf nvhk+FGasnv+kll++++ ++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++e Sopen02g031200.1 12 PCAACKFLRRKCLPGCIFGPYFPPEDPQKFSNVHKIFGASNVSKLLNEIEAHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKE 104 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Sopen02g031200.1 105 LDATNA 110 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.71	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-42	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSCSSSSSSN PPCAACKFLR RKCLPGCIFG PYFPPEDPQK FSNVHKIFGA SNVSKLLNEI 60 EAHQREDAVN SLAYEAEARM KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYANANY 120 GVYNNNTTWN NNPNPLPDDD IH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-65	5	121	4	120	LOB family transfactor Ramosa2.1
5ly0_B	2e-65	5	121	4	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065388.1	1e-103	protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	8e-66	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	M1AY89	2e-80	M1AY89_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400032875	3e-81	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-63	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]