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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen02g030270.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GRAS |
| Protein Properties |
Length: 536aa MW: 59456.5 Da PI: 5.4884 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen02g030270.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 332.3 | 9e-102 | 175 | 535 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+ +a +++++s+++++++++++k+fs++sPi+ f
Sopen02g030270.1 175 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRPSSSSDVIQTIKSYKIFSNISPIPMF 261
678*************************999************************......888999999999******************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
s +taNqa+leav+g+ vH+iDfdi+ G++W++++++La+++ +++p lRiT+++++e + e + ++e+L++fA+el++ fe+++++
Sopen02g030270.1 262 SSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPILRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFVL 352
****************************************877666689***********66..99999************************ PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.e 272
+++e l+++++++ +gE++aV l+ +++r + + +++ ++++sP+vvv+v++e + +++ sF + +++ le+ys+l++sl +
Sopen02g030270.1 353 IRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNELRRISPNVVVHVDSEglMGYGAMSFRQTVIDGLEFYSTLLESLeA 436
******************************98......3...48*******************87788***********************88 PP
GRAS 273 aklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
a+++ + ++++k+E+++l ++iv+++ + g++ ++W++++ +aGF+pv ls++a qa++ll +v+++g++v +++++++l+W+
Sopen02g030270.1 437 ANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWKDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWH 524
999999999**********************998.....999*************************************************** PP
GRAS 364 drpLvsvSaWr 374
dr+Lv++SaWr
Sopen02g030270.1 525 DRALVATSAWR 535
**********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MKVPFSTNDN VSSKPLINSN NTFTFPAATN GSNLCYEPKS VLELRRSPSP IVDKQIITTN 60
PDLSALCGGE DPLQLGDHVL SNFEDWDSLM RELGLHDDSA SLSKTNPLTH SESLTQFHNL 120
SEFSAESNQF PNPDFSFSDT NFPQQFPTVN QASFINALDL SGDIHQNWSV GFDYVDELIR 180
FAECFETNAF QLAHVILARL NQRLRSAAGK PLQRAAFYFK EALQAQLAGS ARQTRPSSSS 240
DVIQTIKSYK IFSNISPIPM FSSFTANQAV LEAVDGSMLV HVIDFDIGLG GHWASFMKEL 300
ADKAECRKAN APILRITALV PEEYAVESRL IRENLTQFAR ELNIGFEIDF VLIRTFELLS 360
FKAIKFMEGE KTAVLLSPAI FRRVGSGFVN ELRRISPNVV VHVDSEGLMG YGAMSFRQTV 420
IDGLEFYSTL LESLEAANIG GGNCGDWMRK IENFVLFPKI VDMIGAVGRR GGGGSWKDAM 480
VDAGFRPVGL SQFADFQADC LLGRVQVRGF HVAKRQAEML LCWHDRALVA TSAWRC
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
