PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 527aa MW: 55057.1 Da PI: 8.4932

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g030250.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopen02g030250.1 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.4	0.00011	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + Sopen02g030250.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.8E-7	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.036	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.0E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.8E-7	137	162	No hit	No description
PROSITE profile	PS50157	8.746	142	170	IPR007087	Zinc finger, C2H2
SMART	SM00355	66	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PLKESAKKKR NLPGMPDPDA EVIALSPTTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKRVYVCP ESSCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAQESAKT LPEKPPSTNE EPKTQAVASS SPPPSPPAPP PAIECQPPPP 240 PPPAPKSLMT PTVPPSTAVM SFASSVQNRE LRENPVTNSA GAATKQVLEE AAAVASLTGN 300 CSSSCSNGSS SSNVFGSLFA SSTASGSLPS QAPVFSDMFR AMAPEHTLEM APPSSTEPIS 360 LGLAMSHSSS IFRPAGQERR QYAPAPQPAM SATALLQKAA QMGAAATSSS LLRGIGVMSS 420 TSSSNGHQEW SGRPIDANGA SLAAGLGLGL PCDAGSGLKE LMLGTPSVFD PKHPTLDLLG 480 LGMAASVGPS PGLSALLTSM GSNLDMVTSA GSFGSADFSG KDLGRNS

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PLKESAKKKR NLPGMPDPDA EVIALSPTTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKRVYVCP ESSCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAQESAKT LPEKPPSTNE EPKTQAVASS SPPPSPPAPP PAIECQPPPP  240
PPPAPKSLMT PTVPPSTAVM SFASSVQNRE LRENPVTNSA GAATKQVLEE AAAVASLTGN  300
CSSSCSNGSS SSNVFGSLFA SSTASGSLPS QAPVFSDMFR AMAPEHTLEM APPSSTEPIS  360
LGLAMSHSSS IFRPAGQERR QYAPAPQPAM SATALLQKAA QMGAAATSSS LLRGIGVMSS  420
TSSSNGHQEW SGRPIDANGA SLAAGLGLGL PCDAGSGLKE LMLGTPSVFD PKHPTLDLLG  480
LGMAASVGPS PGLSALLTSM GSNLDMVTSA GSFGSADFSG KDLGRNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	138	199	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-33	138	199	3	64	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063319.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
Swissprot	Q9LVQ7	1e-169	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A3Q7F7K4	0.0	A0A3Q7F7K4_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400033039	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-131	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]