PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g029840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 78aa    MW: 8910 Da    PI: 9.4528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g029840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12851344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+ E +++ +a + + ++   +W  Iar++g g++ +++k+++
  Sopen02g029840.1  8 AWTPRENKKFEQALAVYDKDtsdRWQNIARYVG-GKSVEEVKHHY 51
                      7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.488459IPR017884SANT domain
SMARTSM007173.5E-9557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-6761IPR009057Homeodomain-like
PfamPF002496.6E-10851IPR001005SANT/Myb domain
CDDcd001672.83E-9851No hitNo description
SuperFamilySSF466892.17E-13962IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASNSLTAWT PRENKKFEQA LAVYDKDTSD RWQNIARYVG GKSVEEVKHH YAILVEDLKH  60
IESGDVPFPK YKSGGKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29175177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-130HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232415.17e-53protein RADIALIS-like 5
RefseqXP_015064236.17e-53protein RADIALIS-like 5
SwissprotQ1A1736e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8FSL36e-49A0A1U8FSL3_CAPAN; Transcription factor RADIALIS
TrEMBLA0A2G2XGW16e-49A0A2G2XGW1_CAPBA; Transcription factor RADIALIS
TrEMBLA0A2G3AAH46e-49A0A2G3AAH4_CAPAN; protein RADIALIS-like 1
TrEMBLA0A2G3D7X76e-49A0A2G3D7X7_CAPCH; Transcription factor RADIALIS
TrEMBLA0A3Q7F9L29e-47A0A3Q7F9L2_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000092772e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-32RAD-like 6