PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g029550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 40192.6 Da PI: 6.3441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 5.9e-05 | 261 | 300 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq Sopen02g029550.1 261 VRKEKLGDRISALHRLVAPF-----GKTDTASVLTEAIGYIQFLQ 300 57778889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.46E-6 | 248 | 303 | No hit | No description |
PROSITE profile | PS50888 | 11.947 | 250 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-7 | 260 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 260 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDSTNLYNHH QLQQLSGYPF FSTGVSTLHD WNSGITSEEE YYYKLGHMKR ISSEELMWKR 60 GIDTFPLMNT SMFHDGHHES SNDQLDDKNN KAGYIISNDY FLKMKDMNSL SNNMFKESYF 120 ENEQQHAFDL NENLLSEDSY MNNANNSSYV PSHDMEYSDF QGLKLAFNGV TFKNSHDSNS 180 NSNSNCFGHF TTERMSSGFA DGLQELTHSP SSKKITSNVR KNIGVSSKAK RSAEDEANPC 240 QEASKKSRVT SQSPSTLMLK VRKEKLGDRI SALHRLVAPF GKTDTASVLT EAIGYIQFLQ 300 DQILTLSMPY TKSTERKLHH INLKDSSIEA VLDLESRGLC LVPTSFSSYI SQSCD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064411.1 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A3Q7F786 | 0.0 | A0A3Q7F786_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g084880.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13443 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 1e-30 | bHLH family protein |