PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g029200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 1550aa    MW: 170187 Da    PI: 6.7651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g029200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-0615271550226
                        -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                        ++++C+ f+++G Ck G+ C + H+
  Sopen02g029200.1 1527 GQRICK-FYESGRCKKGAACDYLHP 1550
                        6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.88E-894147IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-798155IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564100166IPR019787Zinc finger, PHD-finger
CDDcd155683.30E-19102147No hitNo description
SMARTSM002493.1E-7102148IPR001965Zinc finger, PHD-type
PROSITE patternPS013590103163IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475921.9E-20355432IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.5E-25356438IPR003121SWIB/MDM2 domain
SMARTSM001511.8E-4358436IPR019835SWIB domain
PfamPF022015.8E-14358431IPR003121SWIB/MDM2 domain
PROSITE profilePS5136024.468489622IPR004343Plus-3 domain
SMARTSM007196.4E-39489599IPR004343Plus-3 domain
SuperFamilySSF1590425.75E-30490618IPR004343Plus-3 domain
PfamPF031266.6E-21494597IPR004343Plus-3 domain
SuperFamilySSF552771.7E-14799860IPR003169GYF domain
PROSITE profilePS5082913.386809862IPR003169GYF domain
SMARTSM004444.5E-7810864IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.3E-13811862IPR003169GYF domain
PfamPF022132.4E-9812853IPR003169GYF domain
PROSITE profilePS5010315.07515251550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.95E-615251549IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1550 aa     Download sequence    Send to blast
MDGGVNSSSE QAHNQRLDEG TATSMELQRL EECSSVHYRE GSQLVGVSSS VAGDGGVSAT  60
VAVDVRYSAA NVIDNRKRGR SPRNLMVKPP VPKKPRVEDE DVCFICFDGG SLVLCDRKGC  120
PKAYHPACIK RDEAFFRSKA KWNCGWHICS VCQKASHYLC YTCTYSLCKA CTRNSDYLCV  180
RGNKGFCSTC MKTIMLIENK DQADKEMVQV DFDDKTSWEY LFKVYWVILK ENLSLTLDEL  240
LQAKNPWKEL NAVHGKRPLL PYGHYVANNG KGISGKAFDH LELKKPSALL ELSNKDPPTT  300
ESRTTAESDN PSIFSSSPQS ELTKPAVELE LQNGHCLRTK QGSTAMQTSV NGCREWASKE  360
LLDFVAHMKD GETSAISQFD VQTLLLDYIK KNNLRDPRRK SQIICDSRLK SLFGKTCVGH  420
IEMLKLLEFH FLIKEDSDKS AFIPAGIVGI VSSHVELDDS NETSSSKKRK SRKNGEVKMT  480
QINLDEFAAI DAHNINFLYL RRDLMENLTE DVEKFHDRVT GSVVRIRIPG NDQKQEIYRL  540
VHVVGTCKTS ESYKIRDKTV DVQLEVLNLD KKETISIDSI SNQEFCEDEC RRLRQSIKCG  600
LVKRLTVGEI QKKAMELRAV KLNDSLEAEI FRLNNLRDRA SEKGHKKEYP LLRQYTLINI  660
DHEHEGFLDT STLRECVEKL ELLKTPEERH RRLLEIPEVH ADPKMNPDYE SGGDDGEHKN  720
KIKVEHPAPR CTRFSRRKLI SSGSLVKEEG SIMAQCRMSG KRDACGTNIS DKQGNQLTVE  780
QAVDRSGSET SIASLLMANT SSVISIETDK LWHYRDPAKR IQGPFSVMQL RKWNTSGLFP  840
PDMMIWTNHE HEDSVLLTNA LKGFFHKESQ VHDKTSSQSQ EPTSLDNRTS VRWSESAGSG  900
GECEKREAPG HHHNANYCSN GNTKFTRMKG LSPSFPRCVE SLKGNNSCSD KPQLLNSTSS  960
SQREVILALP RQGKGHGTDK SRSVADYGTQ NSRKSTLCHA QSNRRNLDPS SGQNQKSFTS  1020
NKCSINLDSG STFASAIKSS DLLFEQKGEM NLPDLASPTP ETSYGDLEAQ AAEKLLLLSS  1080
VIPVCGSDVH DLPSPTPISN SEAQGAHAAE NKESGPSDLP DSEARGGHAG ENKESGLSSL  1140
PIQESGQRWS SASSPVVGGP QLHEIADEWG RSSPAAKPST EEWDSTLVSV SSLKPVDTVS  1200
DRVATPPSIA NLLTAKPSTG EWDSGLVSVS SLKPAEAVGD HVVTPASNAD QLNHTSSSHP  1260
MSNFFDEPIE FSTLAEESVS DLLAEVDAME SQNQNGMGSP TSGMRCGEEM ISGCKTDCFS  1320
PIEELSHTHD PVRSDDLSST GDLLLPCQSS VTDETVGASR ADAFDPLRRS GGNSSTSSEG  1380
ETKSVDVLFS QGDVRCGIPA PCTTGIPASC TTSQPSAFSA IGRSTVFEGM MNGRGAAPGK  1440
PSQGYANVGY GSNMGGAWGN SHMNRGAPFS GNNPVWDSQR RYAGERSGGP RDWALQGGES  1500
GFGRGRPSWN RQQPYGGGGY SRPPPKGQRI CKFYESGRCK KGAACDYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-1391169681Histone-lysine N-methyltransferase NSD3
4gnd_C1e-1391169681Histone-lysine N-methyltransferase NSD3
4gne_A1e-1391169681Histone-lysine N-methyltransferase NSD3
4gnf_A1e-1391169681Histone-lysine N-methyltransferase NSD3
4gng_A1e-1391169681Histone-lysine N-methyltransferase NSD3
4gng_D1e-1391169681Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066244.10.0zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A3Q7F7280.0A0A3Q7F728_SOLLC; Uncharacterized protein
STRINGXP_009600608.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding