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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen02g029060.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
NAC |
Protein Properties |
Length: 351aa MW: 40389.9 Da PI: 4.7683 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen02g029060.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 178.1 | 2.3e-55 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk
Sopen02g029060.1 8 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLQdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDK 99
69****************************.9***************943432233667********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
Sopen02g029060.1 100 AVYN-KSKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
****.999*****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:1990110 | Biological Process | callus formation |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MDTNESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI RDIDLYRIEP WDLQDKCRIG 60 YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYNKSKLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLESEE NGPPQEEGWV VCRAFKKKIT GQTKSNNMVE GWESNYFYDE 180 ATTTTTTISS IVDPLEYITR QPPNLSNNNF NNLLCKQETS MDQAAENNLN FSYTNSDQFI 240 QLPQLESPSL PLLKRPISSM CLVSDNNNNN NNNNHEEDGS KNVTADWRAL DKFVASQLSH 300 EETTLYEDDQ HNCSDLGMLL LLSDRGEGPK LNEILSSSSE DSDIGICLFD K
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |