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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen02g028730.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WOX |
Protein Properties |
Length: 274aa MW: 31259.4 Da PI: 6.7932 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen02g028730.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.9 | 4.9e-20 | 27 | 87 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+t+t++q+++L++l+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++
Sopen02g028730.1 27 SRWTPTSDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 87
8*****************8678*************************************97 PP
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2 | Wus_type_Homeobox | 113.9 | 8e-37 | 25 | 89 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+++RWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
Sopen02g028730.1 25 SSSRWTPTSDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 89
789***************9779*****************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MMEQQQHNIE DGGRNNNNSF MCRQSSSRWT PTSDQIRILK DLYYNNGVRS PTAEQIQRIS 60 AKLRQYGKIE GKNVFYWFQN HKARERQKKR LIAAASATDN NNISSMQMIP HLWRSPDDHH 120 KYNTTTTNPG VQCPSPSSHG VLAVGQTGNY GYGTLAMEKS FRECSISPPG GSYHQNLTWV 180 GVDPYNSMST TSPATYPFLE KSNNKHYEET LDEEQEEENY QRGNSALETL SLFPMHEENI 240 ISNFCIKHHE SSGGWYHSDN NNLAALELTL NSFP
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ538329 | 0.0 | AJ538329.1 Lycopersicon esculentum mRNA for wuschel protein (wus gene). |