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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g028310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 220aa MW: 24499 Da PI: 10.2455 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.2 | 6.4e-17 | 150 | 202 | 4 | 56 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++r r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +Lkk+ ++l+ + Sopen02g028310.1 150 DRRNQRMIKNRESAARSRARKQAYMNELESEVAHLVEENARLKKQQQQLRVDA 202 68999****************************************99998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.4E-15 | 147 | 211 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.392 | 149 | 199 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 9.56E-22 | 151 | 198 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-15 | 151 | 200 | No hit | No description |
Pfam | PF00170 | 2.5E-14 | 151 | 199 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.6E-12 | 151 | 199 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 155 | 169 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MWSSSSDNRG LSASSSSSSS SSHSPFSPRL KTMEEVWKDI NLSSLQDHTT NYSSRDHHHL 60 HDHNHQAANF GGTILQDFLA RPFANEPSPA AAAAATAASP VSATTMLNLN SVPELHFFDN 120 PLRKNSILHQ PNASGRKRVV PETEDNSTGD RRNQRMIKNR ESAARSRARK QAYMNELESE 180 VAHLVEENAR LKKQQQQLRV DAANQVPKKN SLYRTSTAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF136919 | 0.0 | EF136919.1 Solanum lycopersicum self-pruning G-box protein (SPGB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065278.1 | 1e-161 | protein FD | ||||
Swissprot | Q84JK2 | 4e-41 | FD_ARATH; Protein FD | ||||
TrEMBL | A1YTV0 | 1e-117 | A1YTV0_SOLLC; Self-pruning G-box protein | ||||
STRING | Solyc02g083520.2.1 | 1e-118 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-35 | bZIP family protein |