PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g026690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 37047.7 Da PI: 7.0962 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G +W+++++ g+ R++k+c++rw +yl Sopen02g026690.1 13 RGLWSPEEDEKLVKHINTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ Sopen02g026690.1 66 RGCFSEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.95 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.36E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.125 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-11 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVKHINT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF 120 DPNTHNLLST KKKNNNNYTK SSIFTIETSL SSSSTKELVS MDMIKASLAA LSTFPNYANN 180 MSMPQYQTSL SRLYGSVCVP TTTNIIGNSN FASTIDYNKQ STIINEKCMW SVTGFETPQH 240 EFGNGHEEMK QEAQVQFEDK NCQEEVLYKV NDLHEFNHDG RRIAENVTFD EGSDFDFEFM 300 DSELVPRGIF TNIDSIDQLA WDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-31 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065447.1 | 0.0 | transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 2e-70 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3Q7F5S7 | 0.0 | A0A3Q7F5S7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g082040.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 7e-79 | myb domain protein 67 |