PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopen02g025910.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 1014aa MW: 115206 Da PI: 5.5384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g025910.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.7	3.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yLk+k+++k++el ++i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++ Sopen02g025910.1 6 LPPGFRFHPTDEELVAYYLKRKINAKEIEL-DIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRK 97 79**************************.99***********6434555777******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +++ vg+kktLv+y+grap+g +tdWvmheyrl Sopen02g025910.1 98 VNS-QTRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-62	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.899	6	156	IPR003441	NAC domain
Pfam	PF02365	9.0E-30	7	133	IPR003441	NAC domain
SuperFamily	SSF53807	7.85E-9	789	972	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKINA KEIELDIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKNLNT TNGAKIGEQQ YYGNAATSDR 180 SSSVDHVYSH DGGRSCHDMM ESSHGLMPSS SSSTSMAVHG SSNVCAPSDG DDDKWMQYLS 240 SNEPNFTFNN SLQPIPNCGT LPFPPSKVDI ALECARLQHR FTLPQLEIQD FTQVGSYVDH 300 AKIPAQSSFI QQASQNHVIN QDYSWSGNYN SSCAPNMDDD FSFLIPLNNS NQIHHHGDLG 360 SFNFMEQDEN VIRSIDIGDF DHQDFKSDRM VENLRWIGMS NRDLEKTFLE DYKTVPLENV 420 ATVHIEAHEL QGENSGHSNS FITGFNETEA NNFSIGFDNF LDNDGDIDGF SNSPSFEVYE 480 KVEVNHGFFI ATRQASKTFY HQVTPSRTLK IHKNLVPLHD FPKSSINNFV TRPWTTTMRT 540 LVGMVAILQT FWLYFGECLE LEAKGFKLED KKGVYEECCL IEGVEKKIKK VHDFKWDFYK 600 QNKFPIGEKQ EEGIKYCCYV EKKWPNYLTL SLDYANAAIP TVKVGNISKV GDSAYFRIYY 660 GQTFKVIKNT LDGKSYLLIQ NNTRMASRTK YCTSRIKSFV IPLANYSIET DYFFPVSFFE 720 LLGLLGNLKG ITSTYVASQC VLKLYHDGQV ESINKTDHQQ LAQKAAHFIA NTDESQPCNF 780 ATFVPIGEDA PLQRAEWIKY LGVFANMENR ANQVYDAIKE NYLCLSKAAT GRSSLKPTVS 840 WMEYKDGVWL FTRDPYKLKF VEDAGGVNVD DSINKVTYNM SNPDDLEEIH AILCTVDVVI 900 DETYTSDPAA YNGSTFLGNI NLEDQTCFAF LTNQSIWRYD KRVQNSVVLD WYDGAVSQPQ 960 LVLADIIEAL YPTGNYNTTY FRNIAKGEGI ISIVPEMCER DSSIPMEPTV VACQ

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKINA KEIELDIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKNLNT TNGAKIGEQQ YYGNAATSDR  180
SSSVDHVYSH DGGRSCHDMM ESSHGLMPSS SSSTSMAVHG SSNVCAPSDG DDDKWMQYLS  240
SNEPNFTFNN SLQPIPNCGT LPFPPSKVDI ALECARLQHR FTLPQLEIQD FTQVGSYVDH  300
AKIPAQSSFI QQASQNHVIN QDYSWSGNYN SSCAPNMDDD FSFLIPLNNS NQIHHHGDLG  360
SFNFMEQDEN VIRSIDIGDF DHQDFKSDRM VENLRWIGMS NRDLEKTFLE DYKTVPLENV  420
ATVHIEAHEL QGENSGHSNS FITGFNETEA NNFSIGFDNF LDNDGDIDGF SNSPSFEVYE  480
KVEVNHGFFI ATRQASKTFY HQVTPSRTLK IHKNLVPLHD FPKSSINNFV TRPWTTTMRT  540
LVGMVAILQT FWLYFGECLE LEAKGFKLED KKGVYEECCL IEGVEKKIKK VHDFKWDFYK  600
QNKFPIGEKQ EEGIKYCCYV EKKWPNYLTL SLDYANAAIP TVKVGNISKV GDSAYFRIYY  660
GQTFKVIKNT LDGKSYLLIQ NNTRMASRTK YCTSRIKSFV IPLANYSIET DYFFPVSFFE  720
LLGLLGNLKG ITSTYVASQC VLKLYHDGQV ESINKTDHQQ LAQKAAHFIA NTDESQPCNF  780
ATFVPIGEDA PLQRAEWIKY LGVFANMENR ANQVYDAIKE NYLCLSKAAT GRSSLKPTVS  840
WMEYKDGVWL FTRDPYKLKF VEDAGGVNVD DSINKVTYNM SNPDDLEEIH AILCTVDVVI  900
DETYTSDPAA YNGSTFLGNI NLEDQTCFAF LTNQSIWRYD KRVQNSVVLD WYDGAVSQPQ  960
LVLADIIEAL YPTGNYNTTY FRNIAKGEGI ISIVPEMCER DSSIPMEPTV VACQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-54	2	133	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065776.1	0.0	NAC domain-containing protein 86-like isoform X1
TrEMBL	A0A3Q7F664	0.0	A0A3Q7F664_SOLLC; Uncharacterized protein
STRING	Solyc02g081270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-138	NAC domain containing protein 28