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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g024970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 730aa MW: 79970.4 Da PI: 5.4306 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++++++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Sopen02g024970.1 60 KKRYHRHTQHQIQEMESFYKECNHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 115 688999***********************************************998 PP | |||||||
2 | START | 216.8 | 7.5e-68 | 250 | 468 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+ eep+W ss e + ++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW++ +a ka+tl Sopen02g024970.1 250 ELAVSAMEELIRMAQTEEPLWLPSSgsETLCEQEYARIFPRGLGpkpatLNSEASRESAVVIMNHINLVEILMDVN-QWTTVFAglvsKAMTL 341 57899********************999999********99888********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 ev+s+g galq+m+ae+q++splvp R+ +f+Ry++q+g+g+wv+vdvS+d+ + ++ v R++++pSg+li++++ng+s+v+wve Sopen02g024970.1 342 EVLSTGvagnhnGALQVMTAEFQVPSPLVPtRENYFLRYCKQHGEGTWVVVDVSLDNLRTVS----VPRCRRRPSGCLIQEMPNGYSRVIWVE 430 ************************************************************97....8************************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 hv+++++ +h ++++lv+sg+a+gak+wvatl+rqce+ Sopen02g024970.1 431 HVEVDENAVHDIYKPLVNSGIAFGAKRWVATLDRQCER 468 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 44 | 119 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.21E-18 | 45 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.71 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-16 | 58 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-16 | 60 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.95E-16 | 60 | 118 | No hit | No description |
PROSITE profile | PS50848 | 47.342 | 241 | 471 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.62E-37 | 242 | 470 | No hit | No description |
CDD | cd08875 | 9.16E-126 | 245 | 467 | No hit | No description |
SMART | SM00234 | 8.2E-63 | 250 | 468 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-57 | 251 | 468 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-5 | 317 | 468 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.92E-24 | 488 | 719 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MFNSHQHLLD ISSSAQRTPD NELDFIRDEE FDSNSGADNM EAPNSGDDDQ ADPNQPPNKK 60 KRYHRHTQHQ IQEMESFYKE CNHPDDKQRK ELGRRLGLEP LQVKFWFQNK RTQMKAQHER 120 CENTQLRNEN EKLRAENIRY KEALSNAACP NCGGPAAIGE MSFDEHQLRI ENARLRDEID 180 RITGIAGKYV GKSALGYSHQ LSLPQPEAPR VLDLAFGPQS GLLGEMYAAG DLLRTAVTGL 240 TDAEKPVVIE LAVSAMEELI RMAQTEEPLW LPSSGSETLC EQEYARIFPR GLGPKPATLN 300 SEASRESAVV IMNHINLVEI LMDVNQWTTV FAGLVSKAMT LEVLSTGVAG NHNGALQVMT 360 AEFQVPSPLV PTRENYFLRY CKQHGEGTWV VVDVSLDNLR TVSVPRCRRR PSGCLIQEMP 420 NGYSRVIWVE HVEVDENAVH DIYKPLVNSG IAFGAKRWVA TLDRQCERLA SVLALNIPTG 480 DVGIITSPAG RKSMLKLAER MVMSFCAGVG ASTTHIWTTL SGSGADDVRV MTRKSIDDPG 540 RPPGIVLSAA TSFWLPVSPK RVFDFLRDEN SRNEWDILSN GGIVQEMAHI ANGRDPGNCV 600 SLLRVNTGTN SNQSNMLILQ ESTTDVTGSY VIYAPVDIAA MNVVLGGGDP DYVALLPSGF 660 AILPDGPINY HGGGNSEIDS PGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVEK 720 IKGAVTSANA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF518780 | 0.0 | JF518780.1 UNVERIFIED: Solanum lycopersicum GL2 protein-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066898.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Refseq | XP_027770690.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A3Q7F4X2 | 0.0 | A0A3Q7F4X2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g080260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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