PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g022960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 196aa MW: 21961.9 Da PI: 8.687 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 2.9e-11 | 22 | 70 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55 + +E++RR+++++ + +L +l+ ++ +++K ls + Le+A +YIk+Lq Sopen02g022960.1 22 KTIEKNRRNQMKDLYMKLNSLVHHD---QHTKefLSLPDQLEEAANYIKKLQ 70 689*********************8...666669*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.502 | 16 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-8 | 20 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-8 | 22 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-9 | 22 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.86E-5 | 24 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEQQYCSNKP SSSSSCKAAD RKTIEKNRRN QMKDLYMKLN SLVHHDQHTK EFLSLPDQLE 60 EAANYIKKLQ IDLEKMRLKK ETLTASAGTL NSNSNSSTNT NGRTLENTLP LPHIEIHNVN 120 SALEVLLITG LDYHFMFNHI IRMLHEDGVQ IISANYTLVG HTIFHSIHSK VGESATSSAA 180 KIISEKLKQF VGAAAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065325.1 | 1e-144 | transcription factor bHLH162 | ||||
TrEMBL | A0A3Q7F4E7 | 1e-127 | A0A3Q7F4E7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g078130.2.1 | 1e-128 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5105 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-36 | bHLH family protein |