PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g022790.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 407aa MW: 44738.4 Da PI: 7.6881

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g022790.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.7e-39	61	119	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Sopen02g022790.1 61 PHLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 119 5789****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	62	117	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-28	63	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MVGECEKMVL ISSSTTNQIW PQIDEKNNLM MDSNGTNAAT SNNMEKPIQD PSQQQQPPPP 60 PHLKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRIKR 120 PSVNSSSSTT TTTSSSHDVI TTSTPNMVNP SHHHQLHHGV VHNNIDHLST TNSQNHLNPL 180 FYGLTHERSD LNIPFARLFN SRVSSHAGGV DPEGQVYSIT DNIPGLMDRR MGLGFSNSSG 240 GVVNMGHENN NSSSNYGHGG FNPIKQIQDV HVMSTSNCTT STTSLLSSYP NMFGSSSSTS 300 TMASLIASSL QQQKFMSNIN GNNFHNLLTP NNYEELQMSR GENNNTNINN VHEGGGNGIT 360 MLKEEKMDLS NHQIHEQIIN SSDPSLSWNG AWLDPSNMGS NSVPSLI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MVGECEKMVL ISSSTTNQIW PQIDEKNNLM MDSNGTNAAT SNNMEKPIQD PSQQQQPPPP  60
PHLKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRIKR  120
PSVNSSSSTT TTTSSSHDVI TTSTPNMVNP SHHHQLHHGV VHNNIDHLST TNSQNHLNPL  180
FYGLTHERSD LNIPFARLFN SRVSSHAGGV DPEGQVYSIT DNIPGLMDRR MGLGFSNSSG  240
GVVNMGHENN NSSSNYGHGG FNPIKQIQDV HVMSTSNCTT STTSLLSSYP NMFGSSSSTS  300
TMASLIASSL QQQKFMSNIN GNNFHNLLTP NNYEELQMSR GENNNTNINN VHEGGGNGIT  360
MLKEEKMDLS NHQIHEQIIN SSDPSLSWNG AWLDPSNMGS NSVPSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063472.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	Q0PY33	0.0	Q0PY33_SOLLC; Dof zinc finger protein
STRING	Solyc02g077950.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	5e-36	Dof family protein