PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g022510.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 295aa MW: 33402.8 Da PI: 8.8762

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g022510.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.2	9.7e-34	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+P+d e++ e+L++kv +++++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Sopen02g022510.1 59 LPAGVKFDPSDGEIL-EHLEAKVLSDNHKIHPliddfilTIDGQnGICYTHPQKLP-GVNKDGQVRHFFHRPSKAYTTGTRKRRKVHteidgg 149 799*********9.99*99995553344444433665546******.667777888**************744446655 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Sopen02g022510.1 150 ETRWHKTGKTRPVYI-SGVVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 199 778********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-38	52	218	IPR003441	NAC domain
PROSITE profile	PS51005	32.83	59	218	IPR003441	NAC domain
Pfam	PF02365	2.8E-14	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAWCSQSTVL PIISSSSSSD QENNVIMVTS KTRFITCPSC GHNIQLQHQR GILHDLPGLP 60 AGVKFDPSDG EILEHLEAKV LSDNHKIHPL IDDFILTIDG QNGICYTHPQ KLPGVNKDGQ 120 VRHFFHRPSK AYTTGTRKRR KVHTEIDGGE TRWHKTGKTR PVYISGVVKG YKKILVLYTN 180 YGRQRKPEKT NWVMHQYHLG ENEEEKDGEL VVSKVFYQTQ PRQCGSLTIK KTLDHSNNII 240 NPVLKTTNFV DYYNPNPFMS YNVESQSSPH ELIQNLVVHG DGSSFVIPSE ASKEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064259.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A3Q7FQE6	0.0	A0A3Q7FQE6_SOLLC; Uncharacterized protein
STRING	Solyc02g077610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-116	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]