 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen02g021710.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
Trihelix |
| Protein Properties |
Length: 281aa MW: 32468.8 Da PI: 5.8306 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen02g021710.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 51.4 | 2.8e-16 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++q + +L++a ++ +l+rg+l++++W++vs+ + ++r+ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++l+
Sopen02g021710.1 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQQVSDSVnalhgHSRKTHRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFERLD 114
7**********************************************************************999998888899******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDS 60
VNALHGHSRK THRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDMLIENS 120
DKKVTPVMVS LLPIPMSSPP MGVPLPYRRS AVVTPVSLPQ KRQLPAFDES CFRRNYSAVA 180
AAAAAGGGEE DYDDEEEDVE MTEESWEEDG MRRLAKAIES FGEIYERVEG MKQRQMVELE 240
KQRMQFAKDL EVQRMQLFMD TQVQLEKIKH TKRSGSNDLY S
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 1e-51 | sequence-specific DNA binding transcription factors |
