PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g021710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 281aa MW: 32468.8 Da PI: 5.8306 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.4 | 2.8e-16 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++q + +L++a ++ +l+rg+l++++W++vs+ + ++r+ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++l+ Sopen02g021710.1 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQQVSDSVnalhgHSRKTHRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFERLD 114 7**********************************************************************999998888899******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.9E-25 | 22 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDS 60 VNALHGHSRK THRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDMLIENS 120 DKKVTPVMVS LLPIPMSSPP MGVPLPYRRS AVVTPVSLPQ KRQLPAFDES CFRRNYSAVA 180 AAAAAGGGEE DYDDEEEDVE MTEESWEEDG MRRLAKAIES FGEIYERVEG MKQRQMVELE 240 KQRMQFAKDL EVQRMQLFMD TQVQLEKIKH TKRSGSNDLY S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063492.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | M1AN53 | 1e-156 | M1AN53_SOLTU; Uncharacterized protein | ||||
STRING | Solyc02g076810.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-51 | sequence-specific DNA binding transcription factors |