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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen02g021170.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 303aa MW: 33937.7 Da PI: 6.3673 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen02g021170.2 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 77 | 135 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
Sopen02g021170.2 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 135
69*************************998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MDGRFNNFFV SEQEDSENSP ENSSDSPRSG LFNDNKMITS TSSPKRSRRS IEKRVVSVPI 60 KEIEGSKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD 120 PNMLVVTYSC EHNHPWPASR NNQHNHRTTT NTSCIINNNT KTKMKTIASL TATTTTTTIT 180 TSNIAVSEEK VTGDFTRPSE PNSDEKFVNL GESSSSLINA NEFGWFSDLI ECTSTTMLES 240 PILTQVDCDI DMSSTLTMRE EDVSLFADLG ELPECSTVFG RGMMERDEER RRHSLTSWCG 300 TTG
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU056917 | 0.0 | EU056917.1 Solanum tuberosum WRKY transcription factor 5 mRNA, complete cds. |