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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g019960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27889 Da PI: 5.4276 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.4e-05 | 186 | 230 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n Er+RR ++++ ++ ++P a +++ +++L +Av+Y+ksL Sopen02g019960.1 186 TSNCSERKRR-KLKKMVKAIKGIVPGA-----SRMNTVTVLDEAVRYLKSL 230 6799999998.7**************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.252 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-8 | 184 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-8 | 186 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-6 | 188 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.90E-6 | 191 | 235 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQNNYQFSPQ IQKPFVSLED QAAGGNIFDI PVPSVFDTMA LPTGFQSSVP FHGFKFQSSE 60 ACPKNFIIFD QTDYRSQIMY HPAMASKFPY PDLNYNSTRF QDGMERKIAN NENTEVSSYM 120 KEDSDDINAL LSLEEEEHEE YDEEEVSTAR TDANYGCSSP ESYSNYHCQS KKSRTSSFRE 180 SSGSSTSNCS ERKRRKLKKM VKAIKGIVPG ASRMNTVTVL DEAVRYLKSL KVEVQKLGVD 240 NLKTYA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066957.1 | 0.0 | transcription factor bHLH144 | ||||
TrEMBL | A0A2G2XEA8 | 1e-150 | A0A2G2XEA8_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A3Q7F267 | 1e-151 | A0A3Q7F267_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g070880.1.1 | 1e-152 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8124 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-30 | bHLH family protein |