PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g016470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 332aa    MW: 36621.6 Da    PI: 7.9507
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g016470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.9e-3354110358
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                        v+YkeClkNhAa+lG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRr++e
  Sopen02g016470.1  54 VVVYKECLKNHAANLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRRDPE 110
                       589***************************9999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2755109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.92357108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-2957108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2157107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.37E-16184248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-27186249IPR009057Homeodomain-like
TIGRFAMsTIGR015658.0E-25191247IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELNINTNTT AAITTVKTPE LAETETPSRI QQPKPFSFSN GVLKRKNHHH HPVVVVYKEC  60
LKNHAANLGT HAVDGCGEFL PIPAANPADP TSLKCAACGC HRNFHRRDPE EPPPIATAAI  120
EYQPHHRHHP PPPRGDHGSP NSPSPPPISS AYYPASAPHM LLALSAGFSG EKNQNLPTST  180
TPIAVANSNG RKRFRTKFTP DQKIKMLEFA EKVEWKMQKR DEDLVNNFCN EIGVEKGVLK  240
VWMHNNKTTS ISGKKLDQPN TDNGHNHQNG NSNYTVNGFC IVDRNNTTHH HDNTDSEFHI  300
HHESSMNDDN KKENSSFGAN NVVVTNGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-181922521878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063281.10.0zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-68ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A3Q7F0100.0A0A3Q7F010_SOLLC; Uncharacterized protein
STRINGSolyc02g067320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.14e-61homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]