 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen02g016040.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
TCP |
| Protein Properties |
Length: 229aa MW: 25870.1 Da PI: 9.3328 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen02g016040.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 102.2 | 8.8e-32 | 43 | 165 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65
g+kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak+ i+el+ +
Sopen02g016040.1 43 FGGKDRHSKVLTVKGLRDRRVRLSVPTALQVYDLQDKLGLDQPSKVVDWLLNEAKHDIDELPPLqirdqtglpltglrkeeegtmvvsdedrv 135
689*************************************************************77777777777776666665555444333 PP
TCP 66 .............ssssaseceaesssssasnsssg.............k 89
+ s + k
Sopen02g016040.1 136 kldarnldlkgnsN------------S--------NsnnnnnsfrfglyK 165
22222222211110............1........011111112232220 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MISREVDPSD NNVTMIPKKS SLSSSSSWRR FKDPRIVRVS RAFGGKDRHS KVLTVKGLRD 60
RRVRLSVPTA LQVYDLQDKL GLDQPSKVVD WLLNEAKHDI DELPPLQIRD QTGLPLTGLR 120
KEEEGTMVVS DEDRVKLDAR NLDLKGNSNS NSNNNNNSFR FGLYKDNHSS QSVHTDSHHG 180
VAVPHEQQEI QNLNVMAALP STIYNMPLSS QILVYPPAGL PQYFFHPHI
|
