PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 292aa MW: 33022 Da PI: 6.6676

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g015280.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137	7e-43	7	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kf+nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ + Sopen02g015280.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPRKFENVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQDD 99 7*******************************************************************************************9 PP DUF260 94 lallke 99 l +k+ Sopen02g015280.1 100 LLNAKK 105 987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.766	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	7	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPRKFENVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQDDL LNAKKDLATY IGPQAMLPML 120 QHSGYIQQHP NNPSSSNMMA YNMQPMGLQT GMQQHGAQLM MRDPQQQQQQ QHQVIEAHQL 180 AAVMAAREQE MMRTYEQPQQ QQFNNGYDSA GPVTATGFHQ MSSSVSPSLA LASFDNDPYQ 240 IQQAQQEQHQ VQVQVQPHQL LQQQQQLPQQ PQTPQQQQRA NSEEERSIGP SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065356.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	3e-81	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3Q7F1F7	1e-174	A0A3Q7F1F7_SOLLC; Uncharacterized protein
STRING	Solyc02g065150.1.1	1e-175	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-81	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]