PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g014730.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 299aa    MW: 32789.1 Da    PI: 6.647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g014730.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.2e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Sopen02g014730.3  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfavvlRSRSNVDLKDKWRNL 56
                      79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.237161IPR017930Myb domain
SuperFamilySSF466892.54E-16259IPR009057Homeodomain-like
SMARTSM007173.4E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-14556IPR009057Homeodomain-like
PfamPF002492.6E-8556IPR001005SANT/Myb domain
CDDcd116601.52E-20656No hitNo description
SMARTSM005261.6E-14117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-14117195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.719119187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.4E-15121190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.2E-10124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAVV LRSRSNVDLK DKWRNLHVMA  60
SGWGSRHRGK IVSKSAQPTP KHDDSTLVSY VSENDTEIPD VKPLASTGDE LKDVGSKKPL  120
SRLDDLILES IAKLKESRGS SRNAISSYIE ERYVAPLNFE RLLAANLKVL TEKGRLIKVK  180
HHYRIAPNRA SSDGKGGPFS LPMGGKLDST MVEKNETRIL TKEQIDADLE QMKSMSAEEA  240
AAAAAQAVAE AEVAIAEAER AARIAEEFEA EAEAAQCFAE VASKALQHQT ILVWHVEEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144550.0BT014455.1 Lycopersicon esculentum clone 133802R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066825.10.0single myb histone 6-like
RefseqXP_015066826.10.0single myb histone 6-like
RefseqXP_015066827.10.0single myb histone 6-like
RefseqXP_027770361.10.0single myb histone 6-like
TrEMBLA0A0V0IBG01e-166A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRINGSolyc02g064630.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-63telomere repeat binding factor 1