PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 374aa    MW: 42154.3 Da    PI: 4.7137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.72.1e-14811711127
               NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelv 100
                       de+l+ +yL k v+g  +++ + i+ vd+y   +P++L ++  +++++ + F++ +kk+ +gk+ nr  +   g Wk   + k+v++kkg ++
  Sopen02g013040.1   8 DEQLL-RYLLKFVTGMLVDC-DQIRFVDLYGKeKPSQLFET--TTTDRHHVFTQLKKKKGNGKNFNRgiVGGGGSWKGIDNGKPVYNKKGLKI 96 
                       66666.9***********99.88******97648****633..23457899****************74445899****************** PP

               NAM 101 glkktLvfykgrapkgektdWvmheyr 127
                       g kkt+ f   ++    +  W+m+eyr
  Sopen02g013040.1  97 GFKKTFRFD--EE----NHVWIMKEYR 117
                       ********7..22....458******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.5551146IPR003441NAC domain
SuperFamilySSF1019411.18E-167144IPR003441NAC domain
PfamPF023658.7E-78117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGMMNIDDEQ LLRYLLKFVT GMLVDCDQIR FVDLYGKEKP SQLFETTTTD RHHVFTQLKK  60
KKGNGKNFNR GIVGGGGSWK GIDNGKPVYN KKGLKIGFKK TFRFDEENHV WIMKEYRPSD  120
NILKALRLRG QIRHEEEFAV CSITRSVNSS KVIIPSDNNV ENFIDSVLIS SSQCQEAQNQ  180
FQDLGQSFAQ YQFQDLEQLS STNGIPSDGS NSILNGNVGP VTLVFKESNV SAAKEDECSV  240
YDIATYHKEL DASVYSSSNF VPISSSQPQQ TVKSFIPDLG QISAANVIPN GNITQVSLVT  300
EESKLPQGSV HQETPPDYDI TTYYKQLDAY AVSVLETMVP YIPEPLQEDE VDSIPLFSED  360
FYIGYTDLWL KNWQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-136PREDICTED: uncharacterized protein LOC107057785
TrEMBLA0A3Q7FJ661e-170A0A3Q7FJ66_SOLLC; Uncharacterized protein
STRINGSolyc02g061900.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.12e-06NAC family protein