PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g013020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 24008.2 Da PI: 6.1424 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40 | 1.2e-12 | 6 | 114 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgel 99 +de+l+ yL + v+g ++ + + i++v++y k +P++L + +++++ y F++ +kk gk nr + g W++ g +++v++k++++ Sopen02g013020.1 6 EDEQLI-GYLINFVTGMPVGC-DEIRTVELYgKKKPSQLFDT--TTTDHHYVFTELKKK---GKYFNRgiDGRGGSWREYGANEDVVDKNRSV 91 599999.9**********999.77****9993569****633..234577999988776...5667774345699****************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g k+ + f + e+ W+m+ey l Sopen02g013020.1 92 IGFKRRFRFE--E----ENHMWIMKEYCL 114 *********7..2....3468******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.547 | 1 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-7 | 6 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-15 | 7 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGTNIEDEQL IGYLINFVTG MPVGCDEIRT VELYGKKKPS QLFDTTTTDH HYVFTELKKK 60 GKYFNRGIDG RGGSWREYGA NEDVVDKNRS VIGFKRRFRF EEENHMWIMK EYCLFDSKLK 120 DLRLRGQIRH EGYVVCSIMR KDTCSSQCQE NQDLGLIQSD DLKESTMTAL KQDECSVRQE 180 VVDEETLCNA YTRPLLDSMF RNTPKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233985.1 | 1e-145 | NAC domain-containing protein 96-like | ||||
TrEMBL | A0A3Q7F0A4 | 1e-144 | A0A3Q7F0A4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g062060.1.1 | 1e-145 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-07 | NAC domain containing protein 2 |