PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013010.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 405aa    MW: 45841.3 Da    PI: 4.6727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.11.1e-121411519128
               NAM  19 Lkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvf 108
                       L k v+g++      ++ vd+y   +P++L   +++++++  f   ++kk+ +gk+ nr  +   g Wk   ++++v++kk++++g kkt+ f
  Sopen02g013010.1  14 LVKFVSGNSD----QFQFVDLYGNnKPSQLF-DMTTTDHHHVFTQLKKKKTGNGKNFNRgiVGGGGSWKGIDNSRPVYDKKKTVIGFKKTFRF 101
                       4555555553....356788886538****6.565655666666667777789******74445899************************** PP

               NAM 109 ykgrapkgektdWvmheyrl 128
                          ++    +  W+m+eyrl
  Sopen02g013010.1 102 E--EK----NHVWIMKEYRL 115
                       7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.1951143IPR003441NAC domain
SuperFamilySSF1019411.7E-1526142IPR003441NAC domain
PfamPF023652.5E-636115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEMNFDDEQL MISLVKFVSG NSDQFQFVDL YGNNKPSQLF DMTTTDHHHV FTQLKKKKTG  60
NGKNFNRGIV GGGGSWKGID NSRPVYDKKK TVIGFKKTFR FEEKNHVWIM KEYRLCDKIL  120
KALRLRGHTR LEEEFVVCRI TRSVNSSQVS DHKVENFLDS LLISSSQCQD IFAQDQFQDL  180
RQSQFQDLGQ FGAISAQSQF QENLGFGQLS TANVIPSGES NNILNGNIAP VSLVFKESKL  240
CAAIEEECSV HQQTPSVECS DYDIATYHRE LDAYAASVLE STVPYIPQQQ EDEIDSIPPF  300
YQDFYIGHTN NVIPCGPVSL VFKKSKLCAA IEEECSVPQQ TTSVSESDYD IATYHKELDA  360
YAASILETMV PYIPAEPPQE EVDSIPLFSE DFYIGHTNLW SYSNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-139PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1C7F11e-159M1C7F1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000613821e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041