PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g012890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 518aa    MW: 57681.5 Da    PI: 4.4995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g012890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.91.3e-12711411128
               NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknr..atksgyWkatgkdkevlskkgel 99 
                       de+l+   L k v+g+++++    + vd+y   +P++L    +++ +e++ F++ +kk++ +gk+ nr  +   g Wk   ++++v++kk+++
  Sopen02g012890.1   7 DEQLM-ISLVKFVSGNSVQF----QLVDLYGNnKPSQLF---DTTATEYHVFTQLKKKKTgNGKNFNRgiVGGGGSWKGIDNSRPVYDKKKTV 91 
                       55555.44666777777555....6788886538****5...4466899999887666654899****74445899***************** PP

               NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                       +g kkt+ f   ++    +  W+m+eyrl
  Sopen02g012890.1  92 IGFKKTFRFE--EK----NHVWIMKEYRL 114
                       *********7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6091142IPR003441NAC domain
SuperFamilySSF1019411.96E-1428141IPR003441NAC domain
PfamPF023652.9E-636114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGMNFDDEQL MISLVKFVSG NSVQFQLVDL YGNNKPSQLF DTTATEYHVF TQLKKKKTGN  60
GKNFNRGIVG GGGSWKGIDN SRPVYDKKKT VIGFKKTFRF EEKNHVWIMK EYRLCDKILK  120
ALKLRGHTRL EEEFVVCRIT RSVNSSQVSD HKEENFLDSL LISSSQCQDI FAQNHFQDLG  180
QSQFQDLGQF GAVSAHSQFQ ENLDFGQLST ANVIPSDESN SILNGNIAPV SLMFKESKLC  240
AAIEEECSVH QQTPSVECSD NDIANYHKQL DAYAASVLES TVPYIPQQQE DEIDSGHANN  300
VIPCGLVSLV LKESNVAAAK EEEGSVCPDY DIATYPKQLE EELVVCGITR KVNSGNFLGS  360
YSSQCQETEI RCDHELNSLL AKESNATQFP PAAIQEKCSV PVVHQETPSV KEVECSVRPD  420
LEQFSTSNVI PCGPVSLVFK ESKLCAAIEE ECSVPQQTTS VSESDYDIAT YHKELDAYAA  480
SILETMAPYI PAEPPQEEVD SIPLFSEDFY IGHTNFWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-132PREDICTED: uncharacterized protein LOC107057785
TrEMBLA0A494GA900.0A0A494GA90_SOLLC; Uncharacterized protein
STRINGSolyc00g255510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041