PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g053190.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 334aa    MW: 37370.6 Da    PI: 6.8026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g053190.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-1058107154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +v+ +k+L
  Sopen01g053190.2  58 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQILKDL 107
                       5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-1157130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.26257107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-758112No hitNo description
SuperFamilySSF474591.01E-1258123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-858107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-763113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDQLNHGGLY QSNQLPNHCL TELNQLPSDV SMPPNGLHSE SSSKQKPEAE LKDSIAARKV  60
QKADREKLRR DRLNEQFMEL GKTLDPDRPK NDKASILSDT VQILKDLTAQ VSRLKSEYAA  120
LTDESRELTQ EKNDLREEKA SLKSDIESLN AQYQQRMRTM YPWAGMDHSM VMHPPSYPYP  180
MPVPIPTGPV PMHPPLQPYP FFGNHNPAVV PNPSSFVQYM TPNTLIDQQP TQYMSPIIQP  240
GSMTRQESRN KSSDQGESRI EKSEDSNEVA TDLELKTPGS TYEQDLSSGQ KKSRKLPRKD  300
NSFTDGSSSS KCSSSHSVHA VSSNSVVRGT KTGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058498.10.0transcription factor bHLH121 isoform X1
SwissprotQ9LT233e-86BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A3Q7EUG30.0A0A3Q7EUG3_SOLLC; Uncharacterized protein
STRINGSolyc01g111130.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-80bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]