PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g053190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 333aa    MW: 37283.6 Da    PI: 6.8026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g053190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-1057106154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +v+ +k+L
  Sopen01g053190.1  57 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQILKDL 106
                       5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.26256106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1156128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-857106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1257122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-757111No hitNo description
SMARTSM003534.6E-762112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDQLNHGGLY QSNQLPNHCL TELNQLPSDV SMPPNGLHSE SSKQKPEAEL KDSIAARKVQ  60
KADREKLRRD RLNEQFMELG KTLDPDRPKN DKASILSDTV QILKDLTAQV SRLKSEYAAL  120
TDESRELTQE KNDLREEKAS LKSDIESLNA QYQQRMRTMY PWAGMDHSMV MHPPSYPYPM  180
PVPIPTGPVP MHPPLQPYPF FGNHNPAVVP NPSSFVQYMT PNTLIDQQPT QYMSPIIQPG  240
SMTRQESRNK SSDQGESRIE KSEDSNEVAT DLELKTPGST YEQDLSSGQK KSRKLPRKDN  300
SFTDGSSSSK CSSSHSVHAV SSNSVVRGTK TGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058581.10.0transcription factor bHLH121 isoform X2
SwissprotQ9LT233e-86BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A3Q7EUG30.0A0A3Q7EUG3_SOLLC; Uncharacterized protein
STRINGSolyc01g111130.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-80bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]